Index

Symbols

--add-exon-ids command line option --add-missing-ids command line option --clean command line option --clean-exclude-attributes command line option --clean-group-sgds command line option --clean-replace-attributes command line option --clean-score command line option --debug command line option --discard-unresolved command line option --fields=FIELD_LIST command line option --gff command line option --htseq-count command line option --insert-missing=GENE_FILE command line option --no-percent-encoding command line option

--prepend=PREPEND_STR command line option --remove-attribute=RM_ATTR command line option --report-duplicates command line option --resolve-duplicates=MAPPING_FILE command line option --strict-attributes command line option --version command line option, [1], [2] -f FEATURE_TYPE, --feature=FEATURE_TYPE command line option -h, --help command line option, [1], [2] -i ID_ATTRIBUTE, --id-attribute=ID_ATTRIBUTE command line option -o OUT_FILE command line option -o OUTFILE command line option -o OUTPUT_GFF command line option -t FEATURE_TYPE, --type=FEATURE_TYPE command line option

C

command line option --add-exon-ids --add-missing-ids --clean --clean-exclude-attributes --clean-group-sgds --clean-replace-attributes --clean-score --debug --discard-unresolved --fields=FIELD_LIST --gff --htseq-count --insert-missing=GENE_FILE --no-percent-encoding --prepend=PREPEND_STR --remove-attribute=RM_ATTR --report-duplicates --resolve-duplicates=MAPPING_FILE --strict-attributes --version, [1], [2] -f FEATURE_TYPE, --feature=FEATURE_TYPE -h, --help, [1], [2] -i ID_ATTRIBUTE, --id-attribute=ID_ATTRIBUTE -o OUTFILE -o OUTPUT_GFF -o OUT_FILE -t FEATURE_TYPE, --type=FEATURE_TYPE