gtf2bed
: convert GTF contents to BED format¶
Overview¶
gtf2bed
converts the contents of a GTF file to BED format, printing
a single line for each gene
entry in the input GTF.
Output¶
The program prints the BED file contents directly to stdout, for example:
Gnai3 3 108107280 108146146 - gene
Pbsn X 77837901 77853623 - gene
Cdc45 16 18780447 18811987 - gene
H19 7 142575529 142578143 - gene
Scml2 X 161117193 161258213 + gene
To sent this to a file use:
gtf2bed FILE.gtf > FILE.bed
If any problems are encountered then the program will print warning messages to stderr.